To be honest, I would just get rid of the intro completely, it doesn't add anything to the site (most intros don't).
Besides, the way I see it, the fact that there is a "Skip Intro" button tells the average user that the into isn't important enough to have to watch it in the first place.
In answer to your questions: I would not suggest scaling the browser window down to fit the movie, most people get annoyed when page scripts start resizing their windows.
To center your movie on the page you can use the following:
<table width='100%' height='100%' border=0> <tr>
<td align='center' valign='middle'>
put your Flash object code here
</td>
</tr> </table>
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