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As Chris stated, there's not much we can do without any kind of information, like a link to the page.
My guess is that you have some kind of events on certain elements, that isn't triggered on the elements of the newly loaded content? I only recently noticed (althoug it has been there for some time) that the javascript library jQuery has a binding function called delegate() which allows you to bind event handlers to current and future elements. It basically means that the handler will also be bound to any element that may be loaded at a later time. You might wanna look into it.
If you're using some other library I'm sure it has some similar functionality.
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